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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10027410m | ||||||||
Common Name | CICLE_v10027410mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 245aa MW: 27431 Da PI: 7.2873 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.5 | 2.9e-07 | 91 | 110 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp+C+k+F+r nL+ H+ Ciclev10027410m 91 FSCPICSKTFNRYNNLQMHM 110 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.41E-6 | 85 | 113 | No hit | No description |
Pfam | PF12874 | 8.9E-4 | 91 | 110 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.2E-6 | 91 | 110 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.026 | 91 | 113 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.741 | 91 | 118 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 93 | 113 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 193 | 216 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MTDPYSSNLL TGCTDDDGEE TVAVALHIGL PNRSSSSDHD LDSIRLSSSA DVTAITEDKI 60 KEGVVMSLER LNKGQYWIPT ASQILIGPTQ FSCPICSKTF NRYNNLQMHM WGHGSQYRKG 120 PDSLRGTQPT AMLKLPCYCC AQGCKHNIDH PKARPLKDFR TLQTQYKRKQ VIKPPFAVKG 180 DWRTHEKNCG RIWYCVCGSD FKHKRSLKDH IKAFGHGHAA LGIECFEEDD EPASEIEHDG 240 EYSV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006426804.1 | 0.0 | hypothetical protein CICLE_v10027410mg | ||||
Swissprot | Q9SVY1 | 1e-108 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | V4UKY7 | 0.0 | V4UKY7_9R | ||||
STRING | POPTR_0001s27490.1 | 1e-121 | (Populus trichocarpa) | ||||
STRING | GLYMA13G27371.1 | 1e-120 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-109 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10027410m |
Entrez Gene | 18036196 |