PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027410m
Common NameCICLE_v10027410mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 245aa    MW: 27431 Da    PI: 7.2873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027410mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.52.9e-0791110120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp+C+k+F+r  nL+ H+
  Ciclev10027410m  91 FSCPICSKTFNRYNNLQMHM 110
                      89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.41E-685113No hitNo description
PfamPF128748.9E-491110No hitNo description
Gene3DG3DSA:3.30.160.605.2E-691110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.02691113IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.74191118IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SMARTSM00355160193216IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MTDPYSSNLL TGCTDDDGEE TVAVALHIGL PNRSSSSDHD LDSIRLSSSA DVTAITEDKI  60
KEGVVMSLER LNKGQYWIPT ASQILIGPTQ FSCPICSKTF NRYNNLQMHM WGHGSQYRKG  120
PDSLRGTQPT AMLKLPCYCC AQGCKHNIDH PKARPLKDFR TLQTQYKRKQ VIKPPFAVKG  180
DWRTHEKNCG RIWYCVCGSD FKHKRSLKDH IKAFGHGHAA LGIECFEEDD EPASEIEHDG  240
EYSV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426804.10.0hypothetical protein CICLE_v10027410mg
SwissprotQ9SVY11e-108ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLV4UKY70.0V4UKY7_9R
STRINGPOPTR_0001s27490.11e-121(Populus trichocarpa)
STRINGGLYMA13G27371.11e-120(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-109C2H2 family protein